Trent R. Northen: search on Z-Library

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1

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics

Swenson, Tami L., Karaoz, Ulas, Swenson, Joel M., Bowen, Benjamin P., Northen, Trent R.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.01 MB

english, 2018

2

Untargeted soil metabolomics methods for analysis of extractable organic matter

Swenson, Tami L., Jenkins, Stefan, Bowen, Benjamin P., Northen, Trent R.

Journal:

Soil Biology and Biochemistry

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

3

Cyanobacteria as Biocatalysts for Carbonate Mineralization

Kamennaya, Nina, Ajo-Franklin, Caroline, Northen, Trent, Jansson, Christer

Journal:

Year:

2012

Language:

english

File:

PDF, 543 KB

english, 2012

4

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism

Xiong, Yi, Wu, Vincent W., Lubbe, Andrea, Qin, Lina, Deng, Siwen, Kennedy, Megan, Bauer, Diane, Singan, Vasanth R., Barry, Kerrie, Northen, Trent R., Grigoriev, Igor V., Glass, N. Louise, Swaminathan,

Journal:

Year:

2017

Language:

english

File:

PDF, 9.66 MB

english, 2017

5

Calcifying cyanobacteria—the potential of biomineralization for carbon capture and storage

Christer Jansson, Trent Northen

Journal:

Current Opinion in Biotechnology

Year:

2010

Language:

english

File:

PDF, 238 KB

english, 2010

6

[IEEE 2018 IEEE Micro Electro Mechanical Systems (MEMS) - Belfast (2018.1.21-2018.1.25)] 2018 IEEE Micro Electro Mechanical Systems (MEMS) - Automated flow-based/digital microfluidic platform integrated with onsite electroporation process for multiplex genetic engineering applications

Iwai, Kosuke, Ando, David, Kim, Peter W., Gach, Phillip C., Raje, Manasi, Duncomb, Todd A., Heinemann, Joshua V., Northen, Trent R., Martin, Hector Garcia, Hillson, Nathan J., Adams, Paul D., Singh, A

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

7

Robust Automated Mass Spectra Interpretation and Chemical Formula Calculation Using Mixed Integer Linear Programming

Baran, Richard, Northen, Trent R.

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 627 KB

english, 2013

8

Noninvasive Mapping of Photosynthetic Heterogeneity in Biological Soil Crusts by Positron Emission Tomography: Carbon Fixation

Vandehey, Nicholas T., Northen, Trent R., Brodie, Eoin L., O’Neil, James P.

Journal:

Environmental Science & Technology Letters

Year:

2014

Language:

english

File:

PDF, 6.05 MB

english, 2014

9

Competitive sorption of microbial metabolites on an iron oxide mineral

Swenson, Tami L., Bowen, Benjamin P., Nico, Peter S., Northen, Trent R.

Journal:

Soil Biology and Biochemistry

Year:

2015

Language:

english

File:

PDF, 1012 KB

english, 2015

10

In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation

Couradeau, Estelle, Felde, Vincent J. M. N. L., Parkinson, Dilworth, Uteau, Daniel, Rochet, Alexis, Cuellar, Charlene, Winegar, Geoffrey, Peth, Stephan, Northen, Trent R., Garcia-Pichel, Ferran

Journal:

Frontiers in Environmental Science

Year:

2018

Language:

english

File:

PDF, 3.89 MB

english, 2018

11

Deciphering microbial interactions in synthetic human gut microbiome communities

Venturelli, Ophelia S, Carr, Alex C, Fisher, Garth, Hsu, Ryan H, Lau, Rebecca, Bowen, Benjamin P, Hromada, Susan, Northen, Trent, Arkin, Adam P

Journal:

Molecular Systems Biology

Year:

2018

Language:

english

File:

PDF, 2.69 MB

english, 2018

12

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

Sasse, Joelle, Martinoia, Enrico, Northen, Trent

Journal:

Trends in Plant Science

Year:

2017

Language:

english

File:

PDF, 2.98 MB

english, 2017

13

A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix

Swenson, Tami L., Couradeau, Estelle, Bowen, Benjamin P., De Philippis, Roberto, Rossi, Federico, Mugnai, Gianmarco, Northen, Trent R.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.93 MB

english, 2017

14

Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy

Oliver, Andrew, LaMere, Brandon, Weihe, Claudia, Wandro, Stephen, Lindsay, Karen L., Wadhwa, Pathik D., Mills, David A., Pride, David T., Fiehn, Oliver, Northen, Trent, de Raad, Markus, Li, Huiying, M

Journal:

Year:

2020

File:

PDF, 4.09 MB

2020

15

OpenMSI: A High-Performance Web-Based Platform for Mass Spectrometry Imaging

Rübel, Oliver, Greiner, Annette, Cholia, Shreyas, Louie, Katherine, Bethel, E. Wes, Northen, Trent R., Bowen, Benjamin P.

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 2.86 MB

english, 2013

16

Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust

Van Goethem, Marc W., Swenson, Tami L., Trubl, Gareth, Roux, Simon, Northen, Trent R., Martiny, Jennifer B. H.

Journal:

Year:

2019

File:

PDF, 2.50 MB

2019

17

Combinatorial Screening of Biomimetic Protein Affinity Materials

Trent R. Northen, Matthew P. Greving, Neal W. Woodbury

Journal:

Advanced Materials

Year:

2008

Language:

english

File:

PDF, 657 KB

english, 2008

18

Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme

Kai Deng, Kevin W. George, Wolfgang Reindl, Jay D. Keasling, Paul D. Adams, Taek Soon Lee, Anup K. Singh, Trent R. Northen

Journal:

Rapid Communications in Mass Spectrometry

Year:

2012

Language:

english

File:

PDF, 551 KB

english, 2012

19

Rapid Screening of Fatty Acids Using Nanostructure-Initiator Mass Spectrometry

Reindl, Wolfgang, Northen, Trent R.

Journal:

Analytical Chemistry

Year:

2010

Language:

english

File:

PDF, 1.26 MB

english, 2010

20

Rapid characterization of the activities of lignin-modifying enzymes based on nanostructure-initiator mass spectrometry (NIMS)

Deng, Kai, Zeng, Jijiao, Cheng, Gang, Gao, Jian, Sale, Kenneth L., Simmons, Blake A., Singh, Anup K., Adams, Paul D., Northen, Trent R.

Journal:

Biotechnology for Biofuels

Year:

2018

Language:

english

File:

PDF, 2.38 MB

english, 2018

21

A high-throughput mass spectrometric enzyme activity assay enabling the discovery of cytochrome P450 biocatalysts

de Rond, Tristan, Gao, Jian, Zargar, Amin, de Raad, Markus, Cunha, Jack, Northen, Trent R, Keasling, Jay D

Journal:

Angewandte Chemie International Edition

Year:

2019

Language:

english

File:

PDF, 1.51 MB

english, 2019

22

Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry

Hin-Koon Woo, Eden P. Go, Linh Hoang, Sunia A. Trauger, Benjamin Bowen, Gary Siuzdak, Trent R. Northen

Journal:

Rapid Communications in Mass Spectrometry

Year:

2009

Language:

english

File:

PDF, 298 KB

english, 2009

23

Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics

Baran, Richard, Ivanova, Natalia, Jose, Nick, Garcia-Pichel, Ferran, Kyrpides, Nikos, Gugger, Muriel, Northen, Trent

Journal:

Year:

2013

Language:

english

File:

PDF, 1.40 MB

english, 2013

24

Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces

Chevrette, Marc G., Carlos-Shanley, Camila, Louie, Katherine B., Bowen, Benjamin P., Northen, Trent R., Currie, Cameron R.

Journal:

Frontiers in Microbiology

Year:

2019

Language:

english

File:

PDF, 12.10 MB

english, 2019

25

CRAGE-Duet facilitates modular assembly of biological systems for studying plant-microbe interactions

Wang, Bing, zhao, zhiying, Jabusch, Lauren K, Chiniquy, Dawn M, Ono, Koyo, Conway, Jonathan M, Zhang, Zheyun, Wang, Gaoyan, Robinson, David, Cheng, Jan-Fang, Dangl, Jeffery L., Northen, Trent R., Yosh

Journal:

ACS Synthetic Biology

Year:

2020

File:

PDF, 309 KB

2020

26

Clathrate nanostructures for mass spectrometry

Northen, Trent R., Yanes, Oscar, Northen, Michael T., Marrinucci, Dena, Uritboonthai, Winnie, Apon, Junefredo, Golledge, Stephen L., Nordström, Anders, Siuzdak, Gary

Journal:

Year:

2007

Language:

english

File:

PDF, 705 KB

english, 2007

27

Metabolic Footprinting of Mutant Libraries to Map Metabolite Utilization to Genotype

Baran, Richard, Bowen, Benjamin P., Price, Morgan N., Arkin, Adam P., Deutschbauer, Adam M., Northen, Trent R.

Journal:

ACS Chemical Biology

Year:

2013

Language:

english

File:

PDF, 1.90 MB

english, 2013

28

High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production

Cheng, Xiaoliang, Hiras, Jennifer, Deng, Kai, Bowen, Benjamin, Simmons, Blake A., Adams, Paul D., Singer, Steven W., Northen, Trent R.

Journal:

Frontiers in Microbiology

Year:

2013

Language:

english

File:

PDF, 1.00 MB

english, 2013

29

Identification of Metabolic Signatures Linked to Anti-Inflammatory Effects of Faecalibacterium prausnitzii

Miquel, Sylvie, Leclerc, Marion, Martin, Rebeca, Chain, Florian, Lenoir, Marion, Raguideau, Sébastien, Hudault, Sylvie, Bridonneau, Chantal, Northen, Trent, Bowen, Benjamin, Bermúdez-Humarán, Luis G.,

Journal:

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

30

Attracting and Retaining Top Scientists and Engineers at U.S. National Laboratories and Universities: Listening to the Next Generation

Northen, Trent R., Haegel, Nancy, Sinars, Daniel, Green, Johney, Wellman, Dawn, Schwartz, Daniel T.

Journal:

Interface magazine

Year:

2019

File:

PDF, 1.20 MB

2019

31

Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis

Marc T Facciotti, Wyming L Pang, Fang-yin Lo, Kenia Whitehead, Tie Koide, Ken-ichi Masumura, Min Pan, Amardeep Kaur, David J Larsen, David J Reiss, Linh Hoang, Ewa Kalisiak, Trent Northen, Sunia A Tra

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

32

Determination of glycoside hydrolase specificities during hydrolysis of plant cell walls using glycome profiling

Walker, Johnnie A., Pattathil, Sivakumar, Bergeman, Lai F., Beebe, Emily T., Deng, Kai, Mirzai, Maryam, Northen, Trent R., Hahn, Michael G., Fox, Brian G.

Journal:

Biotechnology for Biofuels

Year:

2017

Language:

english

File:

PDF, 4.62 MB

english, 2017

33

Dynamic substrate preferences predict metabolic properties of a simple microbial consortium

Erbilgin, Onur, Bowen, Benjamin P., Kosina, Suzanne M., Jenkins, Stefan, Lau, Rebecca K., Northen, Trent R.

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 2.07 MB

english, 2017

34

Stable-Isotope Probing Reveals That Hydrogen Isotope Fractionation in Proteins and Lipids in a Microbial Community Are Different and Species-Specific

Fischer, Curt R., Bowen, Benjamin P., Pan, Chongle, Northen, Trent R., Banfield, Jillian F.

Journal:

ACS Chemical Biology

Year:

2013

Language:

english

File:

PDF, 1.15 MB

english, 2013

35

Deuterium-exchange metabolomics identifiesN-methyllysophosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities

Fischer, Curt R., Wilmes, Paul, Bowen, Benjamin P., Northen, Trent R., Banfield, Jillian F.

Journal:

Year:

2012

Language:

english

File:

PDF, 905 KB

english, 2012

36

Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity

Reindl, Wolfgang, Bowen, Benjamin P., Balamotis, Michael A., Green, Jeffrey E., Northen, Trent R.

Journal:

Integrative Biology

Year:

2011

Language:

english

File:

PDF, 2.00 MB

english, 2011

37

Resolving brain regions using nanostructure initiator mass spectrometry imaging of phospholipids

Lee, Do Yup, Platt, Virginia, Bowen, Ben, Louie, Katherine, Canaria, Christie A., McMurray, Cynthia T., Northen, Trent

Journal:

Integrative Biology

Year:

2012

Language:

english

File:

PDF, 3.89 MB

english, 2012

38

Comprehensive In Vitro Analysis of Acyltransferase Domain Exchanges in Modular Polyketide Synthases and Its Application for Short-Chain Ketone Production

Yuzawa, Satoshi, Deng, Kai, Wang, George, Baidoo, Edward E.K., Northen, Trent R., Adams, Paul D., Katz, Leonard, Keasling, Jay D

Journal:

ACS Synthetic Biology

Year:

2016

Language:

english

File:

PDF, 982 KB

english, 2016

39

The lethal cargo of Myxococcus xanthus outer membrane vesicles

Berleman, James E., Allen, Simon, Danielewicz, Megan A., Remis, Jonathan P., Gorur, Amita, Cunha, Jack, Hadi, Masood Z., Zusman, David R., Northen, Trent R., Witkowska, H. Ewa, Auer, Manfred

Journal:

Frontiers in Microbiology

Year:

2014

Language:

english

File:

PDF, 1.53 MB

english, 2014

40

OpenMSI Arrayed Analysis Toolkit: Analyzing spatially defined samples using mass spectrometry imaging

Raad, Markus de, de Rond, Tristan, Rübel, Oliver, Keasling, Jay D, Northen, Trent R., Bowen, Benjamin P.

Journal:

Analytical Chemistry

Year:

2017

Language:

english

File:

PDF, 794 KB

english, 2017

41

Bacteria increase arid-land soil surface temperature through the production of sunscreens

Couradeau, Estelle, Karaoz, Ulas, Lim, Hsiao Chien, Nunes da Rocha, Ulisses, Northen, Trent, Brodie, Eoin, Garcia-Pichel, Ferran

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 477 KB

english, 2016

42

A high‐throughput mass spectrometric enzyme activity assay enabling the discovery of cytochrome P450 biocatalysts

de Rond, Tristan, Gao, Jian, Zargar, Amin, de Raad, Markus, Cunha, Jack, Northen, Trent R, Keasling, Jay D

Journal:

Angewandte Chemie

Year:

2019

Language:

english

File:

PDF, 1.51 MB

english, 2019

43

Mass spectrometry based metabolomics and enzymatic assays for functional genomics

Richard Baran, Wolfgang Reindl, Trent R Northen

Journal:

Current Opinion in Microbiology

Year:

2009

Language:

english

File:

PDF, 987 KB

english, 2009

44

“Replica-Extraction-Transfer” Nanostructure-Initiator Mass Spectrometry Imaging of Acoustically Printed Bacteria

Louie, Katherine B., Bowen, Benjamin P., Cheng, Xiaoliang, Berleman, James E., Chakraborty, Romy, Deutschbauer, Adam, Arkin, Adam, Northen, Trent R.

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

45

A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis

Glasgow, Evan M, Kemna, Elias I, Bingman, Craig A., Ing, Nicole L, Deng, Kai, Bianchetti, Christopher M, Takasuka, Taichi E, Northen, Trent R., Fox, Brian G.

Journal:

Journal of Biological Chemistry

Year:

2020

File:

PDF, 4.83 MB

2020

46

Improved genome annotation through untargeted detection of pathway-specific metabolites

Benjamin P Bowen, Curt R Fischer, Richard Baran, Jillian F Banfield, Trent Northen

Journal:

Year:

2011

Language:

english

File:

PDF, 1.32 MB

english, 2011

47

Tu1746 Faecalibacterium prausnitzii Provides Host Beneficial Metabolic Profile During Inflammation

Miquel, Sylvie, Leclerc, Marion, Martin, Rebeca, Hudault, Sylvie, Bridonneau, Chantal, Raguideau, Sébastien, Northen, Trent, Bowen, Benjamin P., Bermúdez-Humarán, Luis G., Sokol, Harry, Thomas, Muriel

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 45 KB

english, 2014

48

Low-Dose Ionizing Radiation-Induced Blood Plasma Metabolic Response in a Diverse Genetic Mouse Population

Lee, Do Yup, Bowen, Benjamin P., Nguyen, David H., Parsa, Sara, Huang, Yurong, Mao, Jian-Hua, Northen, Trent R.

Journal:

Radiation Research

Year:

2012

Language:

english

File:

PDF, 452 KB

english, 2012

49

Insulator Nanostructure Desorption Ionization Mass Spectrometry

Duncombe, Todd A., Raad, Markus de, Bowen, Benjamin P., Singh, Anup K, Northen, Trent R.

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 6.02 MB

english, 2018

50

Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions

Gao, Jian, Sasse, Joelle, Lewald, Kyle M., Zhalnina, Kateryna, Cornmesser, Lloyd T., Duncombe, Todd A., Yoshikuni, Yasuo, Vogel, John P., Firestone, Mary K., Northen, Trent R.

Journal:

Journal of Visualized Experiments

Year:

2018

Language:

english

File:

PDF, 3.03 MB

english, 2018

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